I used a Wish Token on Apex Predator and extracted the pattern putting my progress at 1/5. I Then used four other Wish Tokens on Apex Predator and dismantled all four of them but my progress remains at 1/5. Of note, when I completed the Prophecy dungeon, it appears that the game rewarded me Wish Tokens twice before and after loading out of the area. That may have caused some issue with acquiring the weapons. I just want the craft Apex, I don't care about other weapons.