I played and beated Halo ce a while ago, after I beated the mission where you see Jenkins hemet recording thing, showing th team getting owned by flood, Johnson was with that team.
Oddly he was alive and well in Halo 2!
How did he survive?
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Boren's Syndrome is a cover-up ONI used to disguise the identity of members of the ORION Project (aka Spartan I Project). The name speaks for itself: [u][b]B[/b][/u]oren's [u][b]S[/b][/u]yndrome There is no point where it is even suggested Johnson got infected (the Graphic Novel even states he wasn't), he just fought his way out.