He survived Halo 3 and will be in Halo 4. Trust me, he'll be back..
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No he didn't 343 Guilty Spark killed him in the cutscene.
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It was a joke. Besides, Johnson can be saved via a glitch anyway so i was poking fun at that. That and he's already been 'killed' before in CE.
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Look it up for confirmation
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He didn't die in CE, there is a reason the flood didn't infect him. Johnson suffered from a rare disease that actually rendered him immune to the Flood and that is how he escaped, at least that is what I found. This disease (can't remember the name) was a possible side effect of becoming a Spartan I, before you say that he couldn't be a Spartan due to his height and lack of armour, those augmentations were introduced in the Spartan II generation. Master Chief was a Spartan II, the disease was not a side effect of the newer generations, so that is why Master Chief does not have it.