We just pushed out a patch to help with a number of issues, but one of the important ones is described here: http://www.bungie.net/7_Bungie-help-I-finished-the-Raid-and-the-boss-didnt/en/Help/Article/12167
If you are seeing similar issues in the raid after taking the patch please post them in this thread and we'll investigate.
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#Help
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I just finished the raid and didn't get any raid armor. My Hunter started at 297 and now he's 300 with better weapons and no armor.