I'm pretty confident that you'll at least be able to fly the ships yourself, and if you can fly them, you'll probably be able to fight them like in Reach :P
They've already confirmed in interviews and the Mail Bag that you can buy different ships (plus, different ships in the ViDoc) and my reasoning is this:
Since they give you the ability to even [i]have[/i] a ship,
and they let you buy [i]other[/i] ships,
and they give you the options to make your ship even [i]cooler,[/i]
Bungie [i]KNOWS[/i] you're not going to want to just admire it in a "garage" or use it simply as fast travel. You're gonna want to fly that sucker, and you're gonna want to have space dogfights with that sucker. I just don't see any other possibility :P
I agree due to the fact that in one of the videos, you see a ship coming out of hyperspped/lightspeed and does a little sequence coming to a stop and graphics plus the way the ship shaked before stopping shows that it's flyable.
I know that Bungie probably won't screw us over on the ship area it's just it seems like it will be something really complex that in the longterm might be difficult to manage even for them .