Maybe the Vex (meld of organic and machine) are the ultimate result of the Fallen tinkering with SIVA. What could have happened:
* Humanity created SIVA
* Rasputin locked away SIVA.
* The Iron Lords tried to liberate SIVA, getting decimated in the process. They locked it away again.
* The Fallen discovered SIVA.
* The Guardians wiped out SIVA once and for all.
* The Fallen looked elsewhere for a way to meld themselves with machine.
* The Fallen found another form of nanotech, which they used to self-augment.
* Over some centuries, they evoloved into the Vex.
* As Vex, they gained the ability to warp through time. They came back here.
* In encountering the splicer Fallen, we are seeing the crude prototypes of the Vex species.