For the quest at the enclave, I got full pattern progress on the Ammit AR2 auto rifle and I am able to craft it. However in the pattern progress tab, it still shows 0/2 even when I extract deepsight versions of this weapon.
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Hey there. It is a known issue that the pattern 'triumph' for Ammit AR2 and Taipan-4FR are bugged for some people. The weapons are indeed still craftable if you've done 2 deepsights and so it's just a visual bug, Bungie will hopefully fix but it is a lower priority issue.