Same here, I thought I was resetting the used charge, but the Lure dismantled instead. Now if I sign out I have to go to Crow and re-acquire the lure next to him...really frustrating!! LUCKILY it retains the charges. Shewww! This must be a Bungie fix!
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Yeah it does retain the charges the problem is if you want to gain progress you have to visit the Crow every time you login/ after daily reset. It's terrible!