Had this issue for a long time, but I own a ship with the Golden Trace shader and Stolen Light transmat effect on it, and neither of them show as owned in collections. Would like to use them on other items, and nothing works to get it to register that I own them (even using the one I had left over on an item did not add it). Storing the items with the shader/transmat on it and picking back up will not add it, neither will using it on another character.
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Edited by ADragonWithin: 11/14/2019 6:41:55 AMYou must receive the Shader or Effect item, itself, for it to be added to Collections. Getting a piece of equipment, a Ship, or a Ghost with a Shader or Effect on it will not add that to your Collections.