So my fireteam and I just finished the "Prove your worth" mission on the Tangled Shore and we tried to load back into the Shattered Throne dungeon to use the tokens to get the bow. However, as soon as we try to spawn in at the start, we spawn in at the end of the dungeon at the boss fight except there are no ads whatsoever. I ended up having to switch characters in order to get an instance to start at the beginning.
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If you didn't finish the Shattered Throne the first run, the checkpoint will save where you left off.