I dont know what is messed up i imagine the websites are but i will need to know where those other fragments are to eventually get 50 any tips or ideas to figure out which ones im missing?
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Most commonly missed/ forgotten fragments are: -Court of Oryx Tier 2 runes (Stolen) -Court of Oryx Tier 3 runes (Antiquated)[changes weekly] -Raid Fragments -Agonarch Rune chest -Worm Food quest (Quest bounty chain) If it is none of these that you are missing, it will be relatively easy to find them since they're most likely scattered around the Dreadnaught or in a readily available place that is easy to check.
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The webiste and trackers count all fragments across all your characters, while the in game count on the dreadnaught screen show you how many you've found on that specific character.