<About the Io Pyramid "looking different", blame how the lights are placed. They aren't structurally different and are the same type of ship.
Also the anomalies are not a result of the Hive or the Traveler. Their signatures are the same as the Pyramids.>
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What if the Black Fleet didn't come here to struggle with the Traveler? Surely they knew that the Traveler was here but didn't head this way until the Traveler emitted a pulse. Maybe the pulse was a distress signal meant for them? There can always be things that haven't been revealed yet.
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<We know everything about their motivations. The Dreams of Alpha Lupi for the Traveler, Unveiling for the Winnower.>