I'm not not asking which super is more effective, I'm literally asking if all supers do the same amount of damage.
If I shoot a boss 3 times with golden gun will the damage I dealt (assuming I'm in the effective range) be equal to a nova bomb or fist of havoc???
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No. Supers can do a wide variety of damage with each being optimal for certain situations. I believe Sunsinger or Bladedancer are the two capable of the most damage in a single super, but the circumstances to do so are rare.