I have seen and taken note of the current known issue re: depositing synthcord.
I cannot deposit mine, at all.
I have tried going to/from orbit.
I have tried exiting to desktop and relogging.
The loom knows I have synthcord and will allow me to press 'e' to deposit it, however the synthcord does not disappear from my inventory, nor is a synthweave bolt created. I can press 'e' repeatedly, if I like, but nothing happens.
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I'm also having the same issue. I deposited my first one for the Season of the Risen fine, but now I'm stuck on an endless loop to deposit more. It's flashing, so it recognizes that I have more but logging out and back in does not fix the issue.