They are aware of the issue. Missing the milestone has no effect on your loot, according to Bungie.
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But aren’t I supposed to get a follow up milestone that gives loot?
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According to Bungie, nope. With/Without the milestone active, you will still receive all the guaranteed rewards.
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Ah, I see. Thank you for the quick response!
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Yee, my milestone disappeared as well, so I was a little worried at first too. And no problem!
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This can’t be true as you are not getting your powerful engram which you get for completing milestones.. what bungie said is that it has no effect on the loot you receive from the raid checkpoints.. I have the milestone on my titan and my warlock and I get a powerful engram .. I’m not getting it on my hunter
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You're mistaken then. Have completed it with the milestone, you get that drop after beating Calus. What vendor did you go to in order to claim that powerful engram?? Quote form hotifx: "Fixed an issue in which raid milestones would not show for some players after the weekly reset (This didn’t affect any raid rewards)"