I have two photos...one in orbit and one in travel to a location. My ship is nowhere to be seen.
[url=http://i60.tinypic.com/2a4tt3l.jpg]in orbit[/url]
[url=http://i59.tinypic.com/2rzb66u.jpg] traveling[/url]
I have the Eon Trespass on normally, and I even tried switching ships. No luck in getting it back.
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Just restart Destiny it is a bug, happened to me a couple days ago.